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Breast-cancer-gene-expression---CuMiDa

Breast-cancer-gene-expression---CuMiDa

active ARFF Database: Open Database, Contents: Original Authors Visibility: public Uploaded 24-03-2022 by Stewart
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Dataset GSE45827 on breast cancer gene expression from CuMiDa 6 classes 54676 genes 151 samples About Here we present the Curated Microarray Database (CuMiDa), a repository containing 78 handpicked cancer microarray datasets, extensively curated from 30.000 studies from the Gene Expression Omnibus (GEO), solely for machine learning. The aim of CuMiDa is to offer homogeneous and state-of-the-art biological preprocessing of these datasets, together with numerous 3-fold cross validation benchmark results to propel machine learning studies focused on cancer research. The database make available various download options to be employed by other programs, as well for PCA and t-SNE results. CuMiDa stands different from existing databases for offering newer datasets, manually and carefully curated, from samples quality, unwanted probes, background correction and normalization, to create a more reliable source of data for computational research. http://sbcb.inf.ufrgs.br/cumida References Feltes, B.C.; Chandelier, E.B.; Grisci, B.I.; Dorn, M. (2019) CuMiDa: An Extensively Curated Microarray Database for Benchmarking and Testing of Machine Learning Approaches in Cancer Research. Journal of Computational Biology, 26 (4), 376-386. [https://doi.org/10.1089/cmb.2018.0238] Grisci, B. I., Feltes, B. C., Dorn, M. (2019). Neuroevolution as a tool for microarray gene expression pattern identification in cancer research. Journal of biomedical informatics, 89, 122-133. [https://doi.org/10.1016/j.jbi.2018.11.013] Inspiration How to deal with class imbalance for classification? How to identify the most important genes for the classification of each cancer subtype? Is it possible to discover subtypes? How to beat the classification and clustering benchmarks for this dataset listed on the CuMiDa website?

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0 missing
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0 missing
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0 missing
244610_x_atnumeric151 unique values
0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
244630_atnumeric151 unique values
0 missing
244631_atnumeric151 unique values
0 missing
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0 missing
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0 missing
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0 missing
244635_s_atnumeric147 unique values
0 missing
244636_atnumeric151 unique values
0 missing
244637_atnumeric149 unique values
0 missing
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0 missing
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0 missing
244640_atnumeric151 unique values
0 missing
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0 missing
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0 missing
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0 missing
244644_atnumeric144 unique values
0 missing
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0 missing
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0 missing
244648_atnumeric150 unique values
0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
38671_atnumeric151 unique values
0 missing
38691_s_atnumeric151 unique values
0 missing
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0 missing
38707_r_atnumeric151 unique values
0 missing
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0 missing
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0 missing
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0 missing
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0 missing
38964_r_atnumeric151 unique values
0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
39835_atnumeric151 unique values
0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
41386_i_atnumeric150 unique values
0 missing
41387_r_atnumeric151 unique values
0 missing
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0 missing
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0 missing
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42361_g_atnumeric151 unique values
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
44783_s_atnumeric151 unique values
0 missing
44790_s_atnumeric151 unique values
0 missing
44822_s_atnumeric151 unique values
0 missing
45288_atnumeric151 unique values
0 missing
45297_atnumeric151 unique values
0 missing
45526_g_atnumeric151 unique values
0 missing
45572_s_atnumeric151 unique values
0 missing
45633_atnumeric151 unique values
0 missing
45653_atnumeric151 unique values
0 missing
45687_atnumeric151 unique values
0 missing
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0 missing
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0 missing
45828_atnumeric151 unique values
0 missing
46142_atnumeric151 unique values
0 missing
46167_atnumeric151 unique values
0 missing
46256_atnumeric151 unique values
0 missing
46270_atnumeric151 unique values
0 missing
46323_atnumeric151 unique values
0 missing
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0 missing
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0 missing
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0 missing
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0 missing
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0 missing
47530_atnumeric151 unique values
0 missing
47550_atnumeric151 unique values
0 missing
47553_atnumeric151 unique values
0 missing
47560_atnumeric151 unique values
0 missing
47571_atnumeric151 unique values
0 missing
47608_atnumeric151 unique values
0 missing
47773_atnumeric151 unique values
0 missing
48030_i_atnumeric151 unique values
0 missing
48031_r_atnumeric151 unique values
0 missing
48106_atnumeric151 unique values
0 missing
48117_atnumeric151 unique values
0 missing
48531_atnumeric151 unique values
0 missing
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0 missing
48612_atnumeric151 unique values
0 missing
48659_atnumeric151 unique values
0 missing
48808_atnumeric151 unique values
0 missing
48825_atnumeric151 unique values
0 missing
49049_atnumeric151 unique values
0 missing
49051_g_atnumeric151 unique values
0 missing
49077_atnumeric151 unique values
0 missing
49111_atnumeric151 unique values
0 missing
49306_atnumeric151 unique values
0 missing
49327_atnumeric151 unique values
0 missing
49329_atnumeric151 unique values
0 missing
49452_atnumeric151 unique values
0 missing
49485_atnumeric151 unique values
0 missing
49679_s_atnumeric151 unique values
0 missing
49878_atnumeric151 unique values
0 missing
50221_atnumeric151 unique values
0 missing
50277_atnumeric151 unique values
0 missing
50314_i_atnumeric150 unique values
0 missing
50374_atnumeric151 unique values
0 missing
50376_atnumeric151 unique values
0 missing
50400_atnumeric151 unique values
0 missing
50965_atnumeric151 unique values
0 missing
51146_atnumeric151 unique values
0 missing
51158_atnumeric151 unique values
0 missing
51176_atnumeric151 unique values
0 missing
51192_atnumeric151 unique values
0 missing
51200_atnumeric151 unique values
0 missing
51226_atnumeric151 unique values
0 missing
51228_atnumeric151 unique values
0 missing
51774_s_atnumeric151 unique values
0 missing
52005_atnumeric151 unique values
0 missing
52078_atnumeric151 unique values
0 missing
52159_atnumeric151 unique values
0 missing
52164_atnumeric151 unique values
0 missing
52169_atnumeric151 unique values
0 missing
52255_s_atnumeric151 unique values
0 missing
52285_f_atnumeric151 unique values
0 missing
52651_atnumeric151 unique values
0 missing
52731_atnumeric151 unique values
0 missing
52741_atnumeric151 unique values
0 missing
52837_atnumeric151 unique values
0 missing
52940_atnumeric151 unique values
0 missing
52975_atnumeric151 unique values
0 missing
53071_s_atnumeric151 unique values
0 missing
53076_atnumeric151 unique values
0 missing
53202_atnumeric151 unique values
0 missing
53720_atnumeric151 unique values
0 missing
53912_atnumeric151 unique values
0 missing
53968_atnumeric151 unique values
0 missing
53987_atnumeric151 unique values
0 missing
53991_atnumeric151 unique values
0 missing
54037_atnumeric151 unique values
0 missing
65884_atnumeric151 unique values
0 missing
AFFX-TrpnX-M_atnumeric151 unique values
0 missing
AFFX-TrpnX-5_atnumeric151 unique values
0 missing
AFFX-TrpnX-3_atnumeric151 unique values
0 missing
AFFX-ThrX-M_atnumeric151 unique values
0 missing
AFFX-ThrX-5_atnumeric151 unique values
0 missing
AFFX-ThrX-3_atnumeric151 unique values
0 missing
AFFX-r2-P1-cre-5_atnumeric147 unique values
0 missing
AFFX-r2-P1-cre-3_atnumeric150 unique values
0 missing
AFFX-r2-Ec-bioD-5_atnumeric151 unique values
0 missing
AFFX-r2-Ec-bioD-3_atnumeric151 unique values
0 missing
AFFX-r2-Ec-bioC-5_atnumeric151 unique values
0 missing
AFFX-r2-Ec-bioC-3_atnumeric151 unique values
0 missing
AFFX-r2-Ec-bioB-M_atnumeric151 unique values
0 missing
AFFX-r2-Ec-bioB-5_atnumeric151 unique values
0 missing
AFFX-r2-Ec-bioB-3_atnumeric151 unique values
0 missing
AFFX-r2-Bs-thr-M_s_atnumeric151 unique values
0 missing
AFFX-r2-Bs-thr-5_s_atnumeric151 unique values
0 missing
AFFX-r2-Bs-thr-3_s_atnumeric151 unique values
0 missing
AFFX-r2-Bs-phe-M_atnumeric149 unique values
0 missing
AFFX-r2-Bs-phe-5_atnumeric150 unique values
0 missing
AFFX-r2-Bs-phe-3_atnumeric151 unique values
0 missing
AFFX-r2-Bs-lys-M_atnumeric151 unique values
0 missing
AFFX-r2-Bs-lys-5_atnumeric151 unique values
0 missing
AFFX-r2-Bs-lys-3_atnumeric151 unique values
0 missing
AFFX-r2-Bs-dap-M_atnumeric150 unique values
0 missing
AFFX-r2-Bs-dap-5_atnumeric151 unique values
0 missing
AFFX-r2-Bs-dap-3_atnumeric151 unique values
0 missing
AFFX-PheX-M_atnumeric151 unique values
0 missing
AFFX-PheX-5_atnumeric151 unique values
0 missing
AFFX-PheX-3_atnumeric151 unique values
0 missing
AFFX-M27830_M_atnumeric151 unique values
0 missing
AFFX-M27830_5_atnumeric151 unique values
0 missing
AFFX-M27830_3_atnumeric151 unique values
0 missing
AFFX-LysX-M_atnumeric151 unique values
0 missing
AFFX-LysX-5_atnumeric151 unique values
0 missing
AFFX-LysX-3_atnumeric151 unique values
0 missing
AFFX-HUMRGE/M10098_M_atnumeric151 unique values
0 missing
AFFX-HUMRGE/M10098_5_atnumeric151 unique values
0 missing
AFFX-HUMRGE/M10098_3_atnumeric151 unique values
0 missing
AFFX-HUMISGF3A/M97935_MB_atnumeric151 unique values
0 missing
AFFX-HUMISGF3A/M97935_MA_atnumeric151 unique values
0 missing
AFFX-HUMISGF3A/M97935_5_atnumeric151 unique values
0 missing
AFFX-HUMISGF3A/M97935_3_atnumeric151 unique values
0 missing
AFFX-HUMGAPDH/M33197_M_atnumeric151 unique values
0 missing
AFFX-HUMGAPDH/M33197_5_atnumeric151 unique values
0 missing
AFFX-HUMGAPDH/M33197_3_atnumeric151 unique values
0 missing
AFFX-hum_alu_atnumeric144 unique values
0 missing
AFFX-HSAC07/X00351_M_atnumeric151 unique values
0 missing
AFFX-HSAC07/X00351_5_atnumeric151 unique values
0 missing
AFFX-HSAC07/X00351_3_atnumeric151 unique values
0 missing
AFFX-DapX-M_atnumeric151 unique values
0 missing
AFFX-DapX-5_atnumeric151 unique values
0 missing
AFFX-DapX-3_atnumeric151 unique values
0 missing
AFFX-CreX-5_atnumeric151 unique values
0 missing
AFFX-CreX-3_atnumeric151 unique values
0 missing
AFFX-BioDn-5_atnumeric151 unique values
0 missing
AFFX-BioDn-3_atnumeric151 unique values
0 missing
AFFX-BioC-5_atnumeric151 unique values
0 missing
AFFX-BioC-3_atnumeric151 unique values
0 missing
AFFX-BioB-M_atnumeric151 unique values
0 missing
AFFX-BioB-5_atnumeric151 unique values
0 missing
AFFX-BioB-3_atnumeric151 unique values
0 missing
91952_atnumeric151 unique values
0 missing
91920_atnumeric151 unique values
0 missing
91826_atnumeric151 unique values
0 missing
91816_f_atnumeric151 unique values
0 missing
91703_atnumeric151 unique values
0 missing
91684_g_atnumeric151 unique values
0 missing
91682_atnumeric151 unique values
0 missing
91617_atnumeric151 unique values
0 missing
91580_atnumeric151 unique values
0 missing
90610_atnumeric151 unique values
0 missing
90265_atnumeric151 unique values
0 missing
89977_atnumeric151 unique values
0 missing
89948_atnumeric151 unique values
0 missing
89476_r_atnumeric151 unique values
0 missing
87100_atnumeric151 unique values
0 missing
823_atnumeric151 unique values
0 missing
81811_atnumeric151 unique values
0 missing
81737_atnumeric151 unique values
0 missing
79005_atnumeric151 unique values
0 missing
78495_atnumeric151 unique values
0 missing
78383_atnumeric151 unique values
0 missing
78330_atnumeric151 unique values
0 missing
78047_s_atnumeric151 unique values
0 missing
77508_r_atnumeric151 unique values
0 missing
76897_s_atnumeric151 unique values
0 missing
74694_s_atnumeric151 unique values
0 missing
71933_atnumeric151 unique values
0 missing
66053_atnumeric151 unique values
0 missing
58696_atnumeric151 unique values
0 missing
58308_atnumeric151 unique values
0 missing

19 properties

151
Number of instances (rows) of the dataset.
54676
Number of attributes (columns) of the dataset.
Number of distinct values of the target attribute (if it is nominal).
0
Number of missing values in the dataset.
0
Number of instances with at least one value missing.
54675
Number of numeric attributes.
0
Number of nominal attributes.
0
Percentage of nominal attributes.
Average class difference between consecutive instances.
100
Percentage of numeric attributes.
0
Percentage of missing values.
0
Percentage of instances having missing values.
0
Percentage of binary attributes.
0
Number of binary attributes.
Number of instances belonging to the least frequent class.
Percentage of instances belonging to the least frequent class.
Number of instances belonging to the most frequent class.
Percentage of instances belonging to the most frequent class.
362.09
Number of attributes divided by the number of instances.

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