one-hundred-plants-shape
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Author: James Cope, Thibaut Beghin, Paolo Remagnino, Sarah Barman.
Source: [UCI](https://archive.ics.uci.edu/ml/datasets/One-hundred+plant+species+leaves+data+set) - 2010
Please cite: Charles Mallah, James Cope, James Orwell. Plant Leaf Classification Using Probabilistic Integration of Shape, Texture and Margin Features. Signal Processing, Pattern Recognition and Applications, in press. 2013.
### Description
One-hundred plant species leaves dataset (Class = Shape).
### Sources
```
(a) Original owners of colour Leaves Samples:
James Cope, Thibaut Beghin, Paolo Remagnino, Sarah Barman.
The colour images are not included.
The Leaves were collected in the Royal Botanic Gardens, Kew, UK.
email: james.cope@kingston.ac.uk
(b) This dataset consists of work carried out by James Cope, Charles Mallah, and James Orwell.
Donor of database Charles Mallah: charles.mallah@kingston.ac.uk; James Cope: james.cope@kingston.ac.uk
```
### Dataset Information
The original data directory contains the binary images (masks) of the leaf samples (colour images not included).
There are three features for each image: Shape, Margin and Texture.
For each feature, a 64 element vector is given per leaf sample.
These vectors are taken as a contiguous descriptor (for shape) or histograms (for texture and margin).
So, there are three different files, one for each feature problem:
* 'data_Sha_64.txt' -> prediction based on shape [dataset provided here]
* 'data_Tex_64.txt' -> prediction based on texture
* 'data_Mar_64.txt' -> prediction based on margin
Each row has a 64-element feature vector followed by the Class label.
There is a total of 1600 samples with 16 samples per leaf class (100 classes), and no missing values.
### Attributes Information
Three 64 element feature vectors per sample.
### Relevant Papers
Charles Mallah, James Cope, James Orwell.
Plant Leaf Classification Using Probabilistic Integration of Shape, Texture and Margin Features.
Signal Processing, Pattern Recognition and Applications, in press.
J. Cope, P. Remagnino, S. Barman, and P. Wilkin.
Plant texture classification using gabor co-occurrences.
Advances in Visual Computing,
pages 699-677, 2010.
T. Beghin, J. Cope, P. Remagnino, and S. Barman.
Shape and texture based plant leaf classification.
In: Advanced Concepts for Intelligent Vision Systems,
pages 345-353. Springer, 2010.
65 features
| Class (target) | nominal | 100 unique values
0 missing | |
| V48 | numeric | 783 unique values
0 missing | |
| V34 | numeric | 801 unique values
0 missing | |
| V47 | numeric | 761 unique values
0 missing | |
| V46 | numeric | 763 unique values
0 missing | |
| V45 | numeric | 758 unique values
0 missing | |
| V44 | numeric | 743 unique values
0 missing | |
| V43 | numeric | 741 unique values
0 missing | |
| V42 | numeric | 730 unique values
0 missing | |
| V41 | numeric | 720 unique values
0 missing | |
| V40 | numeric | 697 unique values
0 missing | |
| V39 | numeric | 718 unique values
0 missing | |
| V38 | numeric | 739 unique values
0 missing | |
| V37 | numeric | 762 unique values
0 missing | |
| V36 | numeric | 766 unique values
0 missing | |
| V35 | numeric | 791 unique values
0 missing | |
| V33 | numeric | 824 unique values
0 missing | |
| V49 | numeric | 769 unique values
0 missing | |
| V50 | numeric | 786 unique values
0 missing | |
| V51 | numeric | 766 unique values
0 missing | |
| V52 | numeric | 749 unique values
0 missing | |
| V53 | numeric | 739 unique values
0 missing | |
| V54 | numeric | 737 unique values
0 missing | |
| V55 | numeric | 723 unique values
0 missing | |
| V56 | numeric | 731 unique values
0 missing | |
| V57 | numeric | 724 unique values
0 missing | |
| V58 | numeric | 748 unique values
0 missing | |
| V59 | numeric | 749 unique values
0 missing | |
| V60 | numeric | 766 unique values
0 missing | |
| V61 | numeric | 754 unique values
0 missing | |
| V62 | numeric | 766 unique values
0 missing | |
| V63 | numeric | 785 unique values
0 missing | |
| V64 | numeric | 804 unique values
0 missing | |
| V17 | numeric | 770 unique values
0 missing | |
| V2 | numeric | 801 unique values
0 missing | |
| V3 | numeric | 774 unique values
0 missing | |
| V4 | numeric | 777 unique values
0 missing | |
| V5 | numeric | 754 unique values
0 missing | |
| V6 | numeric | 735 unique values
0 missing | |
| V7 | numeric | 719 unique values
0 missing | |
| V8 | numeric | 729 unique values
0 missing | |
| V9 | numeric | 715 unique values
0 missing | |
| V10 | numeric | 739 unique values
0 missing | |
| V11 | numeric | 729 unique values
0 missing | |
| V12 | numeric | 756 unique values
0 missing | |
| V13 | numeric | 738 unique values
0 missing | |
| V14 | numeric | 769 unique values
0 missing | |
| V15 | numeric | 767 unique values
0 missing | |
| V16 | numeric | 771 unique values
0 missing | |
| V1 | numeric | 788 unique values
0 missing | |
| V18 | numeric | 769 unique values
0 missing | |
| V19 | numeric | 761 unique values
0 missing | |
| V20 | numeric | 758 unique values
0 missing | |
| V21 | numeric | 752 unique values
0 missing | |
| V22 | numeric | 751 unique values
0 missing | |
| V23 | numeric | 731 unique values
0 missing | |
| V24 | numeric | 742 unique values
0 missing | |
| V25 | numeric | 730 unique values
0 missing | |
| V26 | numeric | 733 unique values
0 missing | |
| V27 | numeric | 736 unique values
0 missing | |
| V28 | numeric | 762 unique values
0 missing | |
| V29 | numeric | 770 unique values
0 missing | |
| V30 | numeric | 783 unique values
0 missing | |
| V31 | numeric | 797 unique values
0 missing | |
| V32 | numeric | 813 unique values
0 missing | |
107 properties
1600
Number of instances (rows) of the dataset.
65
Number of attributes (columns) of the dataset.
100
Number of distinct values of the target attribute (if it is nominal).
0
Number of missing values in the dataset.
0
Number of instances with at least one value missing.
64
Number of numeric attributes.
1
Number of nominal attributes.
0.94
Average class difference between consecutive instances.
0.73
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.DecisionStump -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.62
Error rate achieved by the landmarker weka.classifiers.trees.DecisionStump -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.38
Kappa coefficient achieved by the landmarker weka.classifiers.trees.DecisionStump -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.73
Area Under the ROC Curve achieved by the landmarker weka.classifiers.bayes.NaiveBayes -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.62
Error rate achieved by the landmarker weka.classifiers.bayes.NaiveBayes -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.38
Kappa coefficient achieved by the landmarker weka.classifiers.bayes.NaiveBayes -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.73
Area Under the ROC Curve achieved by the landmarker weka.classifiers.lazy.IBk -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.62
Error rate achieved by the landmarker weka.classifiers.lazy.IBk -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
0.38
Kappa coefficient achieved by the landmarker weka.classifiers.lazy.IBk -E "weka.attributeSelection.CfsSubsetEval -P 1 -E 1" -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W
6.64
Entropy of the target attribute values.
0.73
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.DecisionStump
0.98
Error rate achieved by the landmarker weka.classifiers.trees.DecisionStump
0.01
Kappa coefficient achieved by the landmarker weka.classifiers.trees.DecisionStump
0.04
Number of attributes divided by the number of instances.
Number of attributes needed to optimally describe the class (under the assumption of independence among attributes). Equals ClassEntropy divided by MeanMutualInformation.
0.73
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.J48 -C .00001
0.6
Error rate achieved by the landmarker weka.classifiers.trees.J48 -C .00001
0.4
Kappa coefficient achieved by the landmarker weka.classifiers.trees.J48 -C .00001
0.73
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.J48 -C .0001
0.6
Error rate achieved by the landmarker weka.classifiers.trees.J48 -C .0001
0.4
Kappa coefficient achieved by the landmarker weka.classifiers.trees.J48 -C .0001
0.73
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.J48 -C .001
0.6
Error rate achieved by the landmarker weka.classifiers.trees.J48 -C .001
0.4
Kappa coefficient achieved by the landmarker weka.classifiers.trees.J48 -C .001
1
Percentage of instances belonging to the most frequent class.
16
Number of instances belonging to the most frequent class.
Maximum entropy among attributes.
8.41
Maximum kurtosis among attributes of the numeric type.
0
Maximum of means among attributes of the numeric type.
Maximum mutual information between the nominal attributes and the target attribute.
100
The maximum number of distinct values among attributes of the nominal type.
2.31
Maximum skewness among attributes of the numeric type.
0
Maximum standard deviation of attributes of the numeric type.
Average entropy of the attributes.
3.8
Mean kurtosis among attributes of the numeric type.
0
Mean of means among attributes of the numeric type.
Average mutual information between the nominal attributes and the target attribute.
An estimate of the amount of irrelevant information in the attributes regarding the class. Equals (MeanAttributeEntropy - MeanMutualInformation) divided by MeanMutualInformation.
100
Average number of distinct values among the attributes of the nominal type.
1.39
Mean skewness among attributes of the numeric type.
0
Mean standard deviation of attributes of the numeric type.
Minimal entropy among attributes.
-0.12
Minimum kurtosis among attributes of the numeric type.
0
Minimum of means among attributes of the numeric type.
Minimal mutual information between the nominal attributes and the target attribute.
100
The minimal number of distinct values among attributes of the nominal type.
0.29
Minimum skewness among attributes of the numeric type.
0
Minimum standard deviation of attributes of the numeric type.
1
Percentage of instances belonging to the least frequent class.
16
Number of instances belonging to the least frequent class.
0.97
Area Under the ROC Curve achieved by the landmarker weka.classifiers.bayes.NaiveBayes
0.48
Error rate achieved by the landmarker weka.classifiers.bayes.NaiveBayes
0.51
Kappa coefficient achieved by the landmarker weka.classifiers.bayes.NaiveBayes
0
Number of binary attributes.
0
Percentage of binary attributes.
0
Percentage of instances having missing values.
0
Percentage of missing values.
98.46
Percentage of numeric attributes.
1.54
Percentage of nominal attributes.
First quartile of entropy among attributes.
1.17
First quartile of kurtosis among attributes of the numeric type.
0
First quartile of means among attributes of the numeric type.
First quartile of mutual information between the nominal attributes and the target attribute.
0.62
First quartile of skewness among attributes of the numeric type.
0
First quartile of standard deviation of attributes of the numeric type.
Second quartile (Median) of entropy among attributes.
4.28
Second quartile (Median) of kurtosis among attributes of the numeric type.
0
Second quartile (Median) of means among attributes of the numeric type.
Second quartile (Median) of mutual information between the nominal attributes and the target attribute.
1.71
Second quartile (Median) of skewness among attributes of the numeric type.
0
Second quartile (Median) of standard deviation of attributes of the numeric type.
Third quartile of entropy among attributes.
5.53
Third quartile of kurtosis among attributes of the numeric type.
0
Third quartile of means among attributes of the numeric type.
Third quartile of mutual information between the nominal attributes and the target attribute.
2.01
Third quartile of skewness among attributes of the numeric type.
0
Third quartile of standard deviation of attributes of the numeric type.
0.81
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.REPTree -L 1
0.68
Error rate achieved by the landmarker weka.classifiers.trees.REPTree -L 1
0.31
Kappa coefficient achieved by the landmarker weka.classifiers.trees.REPTree -L 1
0.81
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.REPTree -L 2
0.68
Error rate achieved by the landmarker weka.classifiers.trees.REPTree -L 2
0.31
Kappa coefficient achieved by the landmarker weka.classifiers.trees.REPTree -L 2
0.81
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.REPTree -L 3
0.68
Error rate achieved by the landmarker weka.classifiers.trees.REPTree -L 3
0.31
Kappa coefficient achieved by the landmarker weka.classifiers.trees.REPTree -L 3
0.68
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.RandomTree -depth 1
0.63
Error rate achieved by the landmarker weka.classifiers.trees.RandomTree -depth 1
0.37
Kappa coefficient achieved by the landmarker weka.classifiers.trees.RandomTree -depth 1
0.68
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.RandomTree -depth 2
0.63
Error rate achieved by the landmarker weka.classifiers.trees.RandomTree -depth 2
0.37
Kappa coefficient achieved by the landmarker weka.classifiers.trees.RandomTree -depth 2
0.68
Area Under the ROC Curve achieved by the landmarker weka.classifiers.trees.RandomTree -depth 3
0.63
Error rate achieved by the landmarker weka.classifiers.trees.RandomTree -depth 3
0.37
Kappa coefficient achieved by the landmarker weka.classifiers.trees.RandomTree -depth 3
0
Standard deviation of the number of distinct values among attributes of the nominal type.
0.8
Area Under the ROC Curve achieved by the landmarker weka.classifiers.lazy.IBk
0.4
Error rate achieved by the landmarker weka.classifiers.lazy.IBk
0.6
Kappa coefficient achieved by the landmarker weka.classifiers.lazy.IBk
417 tasks
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31 runs - estimation_procedure: 10-fold Crossvalidation - target_feature: Class
1 runs - estimation_procedure: 5 times 2-fold Crossvalidation - target_feature: Class
0 runs - estimation_procedure: 33% Holdout set - evaluation_measure: predictive_accuracy - target_feature: Class
40 runs - estimation_procedure: 10-fold Learning Curve - target_feature: Class
0 runs - target_feature: Class
0 runs - estimation_procedure: 50 times Clustering
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1308 runs - target_feature: Class
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0 runs - target_feature: Class
0 runs - target_feature: Class
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